package nom.tam.fits;
   
   import java.io.PrintStream;
   
   import nom.tam.fits.header.IFitsHeader;
   import nom.tam.fits.header.Standard;
   import nom.tam.util.ArrayDataOutput;
   import nom.tam.util.ArrayFuncs;
   import nom.tam.util.ColumnTable;
  import nom.tam.util.Cursor;
  
  /*
   * #%L
   * nom.tam FITS library
   * %%
   * Copyright (C) 2004 - 2024 nom-tam-fits
   * %%
   * This is free and unencumbered software released into the public domain.
   *
   * Anyone is free to copy, modify, publish, use, compile, sell, or
   * distribute this software, either in source code form or as a compiled
   * binary, for any purpose, commercial or non-commercial, and by any
   * means.
   *
   * In jurisdictions that recognize copyright laws, the author or authors
   * of this software dedicate any and all copyright interest in the
   * software to the public domain. We make this dedication for the benefit
   * of the public at large and to the detriment of our heirs and
   * successors. We intend this dedication to be an overt act of
   * relinquishment in perpetuity of all present and future rights to this
   * software under copyright law.
   *
   * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
   * EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
   * MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
   * IN NO EVENT SHALL THE AUTHORS BE LIABLE FOR ANY CLAIM, DAMAGES OR
   * OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE,
   * ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
   * OTHER DEALINGS IN THE SOFTWARE.
   * #L%
   */
  
  import static nom.tam.fits.header.Standard.NAXIS1;
  import static nom.tam.fits.header.Standard.NAXIS2;
  import static nom.tam.fits.header.Standard.TDIMn;
  import static nom.tam.fits.header.Standard.TDISPn;
  import static nom.tam.fits.header.Standard.TFIELDS;
  import static nom.tam.fits.header.Standard.TFORMn;
  import static nom.tam.fits.header.Standard.TNULLn;
  import static nom.tam.fits.header.Standard.TSCALn;
  import static nom.tam.fits.header.Standard.TTYPEn;
  import static nom.tam.fits.header.Standard.TUNITn;
  import static nom.tam.fits.header.Standard.TZEROn;
  import static nom.tam.fits.header.Standard.XTENSION;
  
  import edu.umd.cs.findbugs.annotations.SuppressFBWarnings;
  
  /**
   * Binary table header/data unit.
   * 
   * @see BinaryTable
   * @see AsciiTableHDU
   */
  @SuppressWarnings("deprecation")
  public class BinaryTableHDU extends TableHDU<BinaryTable> {
  
      /** The standard column keywords for a binary table. */
      private static final IFitsHeader[] KEY_STEMS = {TTYPEn, TFORMn, TUNITn, TNULLn, TSCALn, TZEROn, TDISPn, TDIMn};
  
      /**
       * Creates a new binary table HDU from the specified FITS header and associated table data
       * 
       * @deprecated       (<i>for internal use</i>) Its visibility should be reduced to package level in the future.
       * 
       * @param      hdr   the FITS header describing the data and any user-specific keywords
       * @param      datum the corresponding data object
       */
      public BinaryTableHDU(Header hdr, BinaryTable datum) {
          super(hdr, datum);
      }
  
      /**
       * Wraps the specified table in an HDU, creating a header for it with the essential table description. Users may
       * want to complete the table description with optional FITS keywords such as <code>TTYPEn</code>,
       * <code>TUNITn</code> etc. It is strongly recommended that the table structure (rows or columns) isn't altered
       * after the table is encompassed in an HDU, since there is no guarantee that the header description will be kept in
       * sync.
       * 
       * @param  tab           the binary table to wrap into a new HDU
       * 
       * @return               A new HDU encompassing and describing the supplied table.
       * 
       * @throws FitsException if the table structure is invalid, and cannot be described in a header (should never really
       *                           happen, but we keep the possibility open to it).
       * 
       * @see                  BinaryTable#toHDU()
       * 
       * @since                1.18
       */
     public static BinaryTableHDU wrap(BinaryTable tab) throws FitsException {
         BinaryTableHDU hdu = new BinaryTableHDU(new Header(), tab);
         tab.fillHeader(hdu.myHeader);
         return hdu;
     }
 
     @Override
     protected final String getCanonicalXtension() {
         return Standard.XTENSION_BINTABLE;
     }
 
     /**
      * @deprecated               (<i>for internal use</i>) Use {@link BinaryTable#fromColumnMajor(Object[])} or
      *                               {@link BinaryTable#fromRowMajor(Object[][])} instead. Will reduce visibility in the
      *                               future.
      *
      * @return                   Encapsulate data in a BinaryTable data type
      *
      * @param      o             data to encapsulate
      *
      * @throws     FitsException if the type of the data is not usable as data
      */
     @Deprecated
     public static BinaryTable encapsulate(Object o) throws FitsException {
         if (o instanceof ColumnTable) {
             return new BinaryTable((ColumnTable<?>) o);
         }
         if (o instanceof Object[][]) {
             return BinaryTable.fromRowMajor((Object[][]) o);
         }
         if (o instanceof Object[]) {
             return BinaryTable.fromColumnMajor((Object[]) o);
         }
         throw new FitsException("Unable to encapsulate object of type:" + o.getClass().getName() + " as BinaryTable");
     }
 
     /**
      * Check if this data object is consistent with a binary table.
      *
      * @param      o a column table object, an Object[][], or an Object[]. This routine doesn't check that the
      *                   dimensions of arrays are properly consistent.
      * 
      * @return       <code>true</code> if the data object can be represented as a FITS binary table, otherwise
      *                   <code>false</code>.
      *
      * @deprecated   (<i>for internal use</i>) Will reduce visibility in the future
      */
     @SuppressFBWarnings(value = "HSM_HIDING_METHOD", justification = "deprecated existing method, kept for compatibility")
     @Deprecated
     public static boolean isData(Object o) {
         return o instanceof nom.tam.util.ColumnTable || o instanceof Object[][] || o instanceof Object[];
     }
 
     /**
      * Check that this is a valid binary table header.
      *
      * @deprecated        (<i>for internal use</i>) Will reduce visibility in the future
      *
      * @param      header to validate.
      *
      * @return            <CODE>true</CODE> if this is a binary table header.
      */
     @SuppressFBWarnings(value = "HSM_HIDING_METHOD", justification = "deprecated existing method, kept for compatibility")
     @Deprecated
     public static boolean isHeader(Header header) {
         String xten = header.getStringValue(XTENSION);
         if (xten == null) {
             return false;
         }
         xten = xten.trim();
         return xten.equals(Standard.XTENSION_BINTABLE) || xten.equals("A3DTABLE");
     }
 
     /**
      * Prepares a data object into which the actual data can be read from an input subsequently or at a later time.
      *
      * @deprecated               (<i>for internal use</i>) Will reduce visibility in the future
      *
      * @param      header        The FITS header that describes the data
      *
      * @return                   A data object that support reading content from a stream.
      *
      * @throws     FitsException if the data could not be prepared to prescriotion.
      */
     @Deprecated
     public static BinaryTable manufactureData(Header header) throws FitsException {
         return new BinaryTable(header);
     }
 
     /**
      * @deprecated               (<i>for internal use</i>) Will reduce visibility in the future
      *
      * @return                   a newly created binary table HDU from the supplied data.
      *
      * @param      data          the data used to build the binary table. This is typically some kind of array of
      *                               objects.
      *
      * @throws     FitsException if there was a problem with the data.
      */
     @Deprecated
     public static Header manufactureHeader(Data data) throws FitsException {
         Header hdr = new Header();
         data.fillHeader(hdr);
         return hdr;
     }
 
     @Override
     public int addColumn(Object data) throws FitsException {
         int n = myData.addColumn(data);
         myHeader.addValue(Standard.NAXISn.n(1), myData.getRowBytes());
         Cursor<String, HeaderCard> c = myHeader.iterator();
         c.end();
         myData.fillForColumn(myHeader, c, n - 1);
         return super.addColumn(data);
     }
 
     /**
      * For internal use. Returns the FITS header key stems to use for describing binary tables.
      * 
      * @return an array of standatd header colum knetwords stems.
      */
     protected static IFitsHeader[] binaryTableColumnKeyStems() {
         return KEY_STEMS;
     }
 
     @Override
     protected IFitsHeader[] columnKeyStems() {
         return BinaryTableHDU.KEY_STEMS;
     }
 
     @Override
     public void info(PrintStream stream) {
         stream.println("  Binary Table");
         stream.println("      Header Information:");
 
         int nhcol = myHeader.getIntValue(TFIELDS, -1);
         int nrow = myHeader.getIntValue(NAXIS2, -1);
         int rowsize = myHeader.getIntValue(NAXIS1, -1);
 
         stream.print("          " + nhcol + " fields");
         stream.println(", " + nrow + " rows of length " + rowsize);
 
         for (int i = 1; i <= nhcol; i++) {
             stream.print("           " + i + ":");
             prtField(stream, "Name", TTYPEn.n(i).key());
             prtField(stream, "Format", TFORMn.n(i).key());
             prtField(stream, "Dimens", TDIMn.n(i).key());
             stream.println("");
         }
 
         stream.println("      Data Information:");
         stream.println("          Number of rows=" + myData.getNRows());
         stream.println("          Number of columns=" + myData.getNCols());
         stream.println("          Heap size is: " + myData.getParameterSize() + " bytes");
 
         Object[] cols = myData.getFlatColumns();
         for (int i = 0; i < cols.length; i++) {
             stream.println("           " + i + ":" + ArrayFuncs.arrayDescription(cols[i]));
         }
     }
 
     /**
      * Check that this HDU has a valid header.
      *
      * @deprecated (<i>for internal use</i>) Will reduce visibility in the future
      *
      * @return     <CODE>true</CODE> if this HDU has a valid header.
      */
     @Deprecated
     public boolean isHeader() {
         return isHeader(myHeader);
     }
 
     private void prtField(PrintStream stream, String type, String field) {
         String val = myHeader.getStringValue(field);
         if (val != null) {
             stream.print(type + '=' + val + "; ");
         }
     }
 
     /**
      * Returns a copy of the column descriptor of a given column in this table
      * 
      * @param  col the zero-based column index
      * 
      * @return     a copy of the column's descriptor
      * 
      * @see        BinaryTable#getDescriptor(int)
      * 
      * @since      1.18
      */
     public BinaryTable.ColumnDesc getColumnDescriptor(int col) {
         return myData.getDescriptor(col);
     }
 
     @Override
     public void setColumnName(int index, String name, String comment)
             throws IndexOutOfBoundsException, HeaderCardException {
         super.setColumnName(index, name, comment);
         getColumnDescriptor(index).name(name);
     }
 
     /**
      * Converts a column from FITS logical values to bits. Null values (allowed in logical columns) will map to
      * <code>false</code>. It is legal to call this on a column that is already containing bits.
      *
      * @param  col           The zero-based index of the column to be reset.
      *
      * @return               Whether the conversion was possible. *
      * 
      * @throws FitsException if the header could not be updated
      * 
      * @since                1.18
      */
     public final boolean convertToBits(int col) throws FitsException {
         if (!myData.convertToBits(col)) {
             return false;
         }
 
         // Update TFORM keyword
         myHeader.getCard(Standard.TFORMn.n(col + 1)).setValue(getColumnDescriptor(col).getTFORM());
 
         return true;
     }
 
     /**
      * Convert a column in the table to complex. Only tables with appropriate types and dimensionalities can be
      * converted. It is legal to call this on a column that is already complex.
      *
      * @param  index         The zero-based index of the column to be converted.
      *
      * @return               Whether the column can be converted
      *
      * @throws FitsException if the header could not be updated
      * 
      * @see                  BinaryTableHDU#setComplexColumn(int)
      */
     public boolean setComplexColumn(int index) throws FitsException {
         if (!myData.setComplexColumn(index)) {
             return false;
         }
 
         // Update TFORM keyword
         myHeader.getCard(Standard.TFORMn.n(index + 1)).setValue(getColumnDescriptor(index).getTFORM());
 
         // Update or remove existing TDIM keyword
         if (myHeader.containsKey(Standard.TDIMn.n(index + 1))) {
             String tdim = getColumnDescriptor(index).getTDIM();
             if (tdim != null) {
                 myHeader.getCard(Standard.TDIMn.n(index + 1)).setValue(tdim);
             } else {
                 myHeader.deleteKey(Standard.TDIMn.n(index + 1));
             }
         }
 
         return true;
     }
 
     // Need to tell header about the Heap before writing.
     @Override
     public void write(ArrayDataOutput out) throws FitsException {
         myData.fillHeader(myHeader, false);
         super.write(out);
     }
 }